* chore: remove dead code
* chore: remove extract_opinions from test and regenerate openapi
- Remove extract_opinions parameter from test_fact_extraction_analysis
- Regenerate OpenAPI spec after removing entity observations code
* chore: update generated files and apply formatting
- Regenerate Python and TypeScript client SDKs after main merge
- Apply ruff formatting to llm_wrapper.py
* fix: accept and filter deprecated 'opinion' fact type in recall
The dead code removal eliminated support for the 'opinion' fact type,
but existing clients may still pass it. Instead of rejecting it with
a ValueError, silently filter it out before validation to maintain
backward compatibility.
* feat: support vertex as llm provider
* fix
* fix: add uv index-strategy to resolve dependency conflicts with pytorch index
When using pytorch index for faster torch downloads in CI,
filelock dependency resolution was failing because pytorch index
only has older versions. Adding unsafe-best-match strategy allows
uv to search all configured indexes.
Also fix type checking warnings from ty.
* fix: add index-strategy to root pyproject.toml for workspace-level uv resolution
* chore: regenerate client SDKs after Vertex AI support
* chore: cleanup benchmarks runner with old flags
* fix tests
* fix: observations rely on source_memory_ids, no link copying
Observations no longer copy any memory_links from their source facts.
Instead, retrieval uses source_memory_ids to traverse:
- Entity connections: observation → source_memory_ids → unit_entities
- Semantic similarity: observations have their own embeddings
- Temporal proximity: observations have their own temporal fields
This avoids data duplication and fixes bidirectionality issues with
entity links being copied to observations.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
* test: update consolidation test for source_memory_ids behavior
Updated test_consolidation_creates_memory_links to test_consolidation_uses_source_memory_ids
to reflect the new behavior where observations use source_memory_ids instead of memory_links
for traversal.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
* fix: misc fixes for observations and mental models
* feat: improve graph retrieval for observations
- Update LinkExpansionRetriever to traverse through source_memory_ids
for observation entity connections (avoiding data duplication)
- Remove entity link copy from world facts to observations in consolidator
- Add tests for link expansion graph retrieval
- Add directives_applied field to ReflectResult
- Include user's other changes (CLI, docs, client updates)
* fix: CI test failures
- Add mental_model_id parameter to create_mental_model function
- Fix ToolCallTrace not including reason field from ToolCall
- Improve test_link_expansion_observation_graph_retrieval to wait for consolidation with retry
* chore: reduce link expansion log verbosity
* Revert "chore: reduce link expansion log verbosity"
This reverts commit 3ce759391cead1012157785fa78fef16ef9bfe3b.
* feat: add semantic/temporal/entity links as fallback in graph retrieval
- Add fallback query for semantic, temporal, and entity links from memory_links
- Check both directions (outgoing and incoming links)
- Weight fallback results at 0.5x to prioritize entity links via unit_entities
- Fixes graph retrieval returning 0 when data has cross-cluster temporal connections
* fix: enable observations fixture for link expansion test
- Add enable_observations fixture to ensure observations are created
- Increase wait time from 10 to 30 seconds for CI reliability
* misc: add mcp integration tests and increase test coverage
* misc: add mcp integration tests and increase test coverage
* misc: add mcp integration tests and increase test coverage
* bump pg0 0.11.x and improve documentation
* bump pg0 0.11.x and improve documentation
* bump pg0 0.11.x and improve documentation
* ci: test notebooks on ci
* ci: test notebooks on ci
* rm llms-full from repo
* formatting
* formatting
