fleet-memory/hindsight-api-slim/hindsight_api/engine/search/mpfp_retrieval.py
Nicolò Boschi 15ea23d5d6
feat: introduce hindsight-api-slim and hindsight-all-slim packages (#560)
* feat: introduce hindsight-api-slim and hindsight-all-slim packages

Closes #552

- Move all source code from hindsight-api/ to new hindsight-api-slim/
- hindsight-api-slim has heavy ML deps (torch, sentence-transformers,
  transformers, einops, flashrank, mlx, mlx-lm, safetensors) and
  pg0-embedded as optional extras: [local-ml], [embedded-db], [all]
- hindsight-api becomes a zero-code meta-package depending on
  hindsight-api-slim[all] for full backward compatibility
- Add hindsight-all-slim meta-package: hindsight-api-slim + client + embed
- hindsight-all updated to depend on hindsight-api-slim[all]
- pg0.py: lazy-import pg0 with clear ImportError pointing to [embedded-db]
- Dockerfile: replace sed hack with proper uv sync --extra flags
- Update release.yml, test.yml, lint.sh, release.sh, CLAUDE.md and
  all path references throughout the repo

* refactor: rename hindsight/ directory to hindsight-all/

* docs: document hindsight-api-slim and hindsight-all-slim package variants

Add package variants table and extras explanation to installation.md

* docs: remove emojis from installation.md, use professional tone

* docs: link Docker slim variant to pip package variants section

* docs: consolidate Docker image variants into single table

* ci: fix working-directory paths after package restructure

- Replace all hindsight-api → hindsight-api-slim in test.yml
- Replace hindsight → hindsight-all in test.yml
- Add --extra embedded-db to test-embed API install step

* ci: add local-ml and embedded-db extras to API sync steps

These extras were previously implicit in the old hindsight-api package
(which bundled everything). Now that hindsight-api-slim uses optional
extras, we must explicitly request local-ml and embedded-db in CI.

* ci: add API install step with embedded-db to test-embed smoke test

The smoke test starts hindsight-api as a daemon, which requires pg0-embedded.
Add a dedicated install step for hindsight-api-slim with embedded-db extra
so the daemon can start successfully.

* ci: remove --no-install-project when using optional extras

When --no-install-project is combined with --extra, the optional deps
are not installed because extras require the project to be active.
Remove --no-install-project from steps that need local-ml or embedded-db.

* ci: fix ordering of uv sync steps to preserve optional extras

When uv sync runs for a different workspace member, it removes optional
extras installed for other members. Fix by always running extra-requiring
API sync last, after other workspace member syncs.

Also remove --no-install-project from embedded-db sync in test-embed,
as --no-install-project prevents optional extras from being active.

* ci: add local-ml extra to test-embed API install for smoke test

The smoke test starts the full API server which needs sentence-transformers
for local embeddings (default provider). Add local-ml extra to the install.

* ci: simplify extras with --all-extras and add slim pip smoke test

- Replace explicit --extra local-ml --extra embedded-db with --all-extras
  for cleaner, more maintainable sync steps
- Add test-pip-slim job: tests hindsight-api-slim[embedded-db] without
  local ML models, using Cohere for embeddings/reranking (mirrors Docker
  slim smoke test approach)

* ci: simplify slim smoke test to health check only (mirrors Docker test)
2026-03-13 13:50:03 +01:00

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"""
Meta-Path Forward Push (MPFP) graph retrieval.
A sublinear graph traversal algorithm for memory retrieval over heterogeneous
graphs with multiple edge types (semantic, temporal, causal, entity).
Combines meta-path patterns from HIN literature with Forward Push local
propagation from Approximate PPR.
Key properties:
- Sublinear in graph size (threshold pruning bounds active nodes)
- Lazy edge loading: only loads edges for frontier nodes, not entire graph
- Predefined patterns capture different retrieval intents
- All patterns run in parallel, results fused via RRF
- No LLM in the loop during traversal
"""
import asyncio
import logging
from collections import defaultdict
from dataclasses import dataclass, field
from ..db_utils import acquire_with_retry
from ..memory_engine import fq_table
from .graph_retrieval import GraphRetriever
from .tags import TagsMatch
from .types import MPFPTimings, RetrievalResult
logger = logging.getLogger(__name__)
# -----------------------------------------------------------------------------
# Data Classes
# -----------------------------------------------------------------------------
@dataclass
class EdgeTarget:
"""A neighbor node with its edge weight."""
node_id: str
weight: float
@dataclass
class EdgeCache:
"""
Cache for lazily-loaded edges.
Grows per-hop as edges are loaded for frontier nodes.
Shared across patterns to avoid redundant loads.
Loads ALL edge types at once to minimize DB queries.
Thread-safe via asyncio lock to prevent redundant concurrent loads.
"""
# edge_type -> from_node_id -> list of EdgeTarget
graphs: dict[str, dict[str, list[EdgeTarget]]] = field(default_factory=dict)
# Track which nodes have been fully loaded (all edge types)
_fully_loaded: set[str] = field(default_factory=set)
# Timing stats
db_queries: int = 0
edge_load_time: float = 0.0
# Detailed hop timing for debugging
hop_details: list[dict] = field(default_factory=list)
# Lock to prevent redundant concurrent loads
_lock: asyncio.Lock = field(default_factory=asyncio.Lock)
def get_neighbors(self, edge_type: str, node_id: str) -> list[EdgeTarget]:
"""Get neighbors for a node via a specific edge type."""
return self.graphs.get(edge_type, {}).get(node_id, [])
def get_normalized_neighbors(self, edge_type: str, node_id: str, top_k: int) -> list[EdgeTarget]:
"""Get top-k neighbors with weights normalized to sum to 1."""
neighbors = self.get_neighbors(edge_type, node_id)[:top_k]
if not neighbors:
return []
total = sum(n.weight for n in neighbors)
if total == 0:
return []
return [EdgeTarget(node_id=n.node_id, weight=n.weight / total) for n in neighbors]
def is_fully_loaded(self, node_id: str) -> bool:
"""Check if all edges for this node have been loaded."""
return node_id in self._fully_loaded
def get_uncached(self, node_ids: list[str]) -> list[str]:
"""Get node IDs that haven't been fully loaded yet."""
return [n for n in node_ids if not self.is_fully_loaded(n)]
def add_all_edges(self, edges_by_type: dict[str, dict[str, list[EdgeTarget]]], all_queried: list[str]):
"""
Add loaded edges to the cache (all edge types at once).
Args:
edges_by_type: Dict mapping edge_type -> from_node_id -> list of EdgeTarget
all_queried: All node IDs that were queried (marks them as fully loaded)
"""
for edge_type, edges in edges_by_type.items():
if edge_type not in self.graphs:
self.graphs[edge_type] = {}
for node_id, neighbors in edges.items():
self.graphs[edge_type][node_id] = neighbors
# Mark all queried nodes as fully loaded (even if they have no edges)
self._fully_loaded.update(all_queried)
@dataclass
class PatternResult:
"""Result from a single pattern traversal."""
pattern: list[str]
scores: dict[str, float] # node_id -> accumulated mass
@dataclass
class MPFPConfig:
"""Configuration for MPFP algorithm."""
alpha: float = 0.15 # teleport/keep probability
threshold: float = 1e-6 # mass pruning threshold (lower = explore more)
top_k_neighbors: int = 20 # fan-out limit per node
# Patterns from semantic seeds
patterns_semantic: list[list[str]] = field(
default_factory=lambda: [
["semantic", "semantic"], # topic expansion
["entity", "temporal"], # entity timeline
["semantic", "causes"], # reasoning chains (forward)
["semantic", "caused_by"], # reasoning chains (backward)
["entity", "semantic"], # entity context
]
)
# Patterns from temporal seeds
patterns_temporal: list[list[str]] = field(
default_factory=lambda: [
["temporal", "semantic"], # what was happening then
["temporal", "entity"], # who was involved then
]
)
@dataclass
class SeedNode:
"""An entry point node with its initial score."""
node_id: str
score: float # initial mass (e.g., similarity score)
# -----------------------------------------------------------------------------
# Lazy Edge Loading
# -----------------------------------------------------------------------------
async def load_all_edges_for_frontier(
pool,
node_ids: list[str],
top_k_per_type: int = 20,
) -> dict[str, dict[str, list[EdgeTarget]]]:
"""
Load top-k edges per (node, edge_type) for frontier nodes.
Uses a LATERAL join to efficiently fetch only the top-k edges per type,
avoiding loading hundreds of entity edges when only 20 are needed.
Requires composite index: (from_unit_id, link_type, weight DESC)
Args:
pool: Database connection pool
node_ids: Frontier node IDs to load edges for
top_k_per_type: Max edges to load per (node, link_type) pair
Returns:
Dict mapping edge_type -> from_node_id -> list of EdgeTarget
"""
if not node_ids:
return {}
async with acquire_with_retry(pool) as conn:
# Use LATERAL join to get top-k per (from_node, link_type)
# This leverages the composite index for efficient early termination
rows = await conn.fetch(
f"""
WITH frontier(node_id) AS (SELECT unnest($1::uuid[]))
SELECT f.node_id as from_unit_id, lt.link_type, edges.to_unit_id, edges.weight
FROM frontier f
CROSS JOIN (VALUES ('semantic'), ('temporal'), ('entity'), ('causes'), ('caused_by')) AS lt(link_type)
CROSS JOIN LATERAL (
SELECT ml.to_unit_id, ml.weight
FROM {fq_table("memory_links")} ml
WHERE ml.from_unit_id = f.node_id
AND ml.link_type = lt.link_type
AND ml.weight >= 0.1
ORDER BY ml.weight DESC
LIMIT $2
) edges
""",
node_ids,
top_k_per_type,
)
# Group by edge_type -> from_node -> neighbors
result: dict[str, dict[str, list[EdgeTarget]]] = defaultdict(lambda: defaultdict(list))
for row in rows:
edge_type = row["link_type"]
from_id = str(row["from_unit_id"])
to_id = str(row["to_unit_id"])
weight = row["weight"]
result[edge_type][from_id].append(EdgeTarget(node_id=to_id, weight=weight))
# Convert nested defaultdicts to regular dicts
return {edge_type: dict(edges) for edge_type, edges in result.items()}
# -----------------------------------------------------------------------------
# Core Algorithm (Async with Lazy Loading)
# -----------------------------------------------------------------------------
@dataclass
class PatternState:
"""State for a pattern traversal between hops."""
pattern: list[str]
hop_index: int
scores: dict[str, float]
frontier: dict[str, float]
def _init_pattern_state(seeds: list[SeedNode], pattern: list[str]) -> PatternState:
"""Initialize pattern state from seeds."""
if not seeds:
return PatternState(pattern=pattern, hop_index=0, scores={}, frontier={})
total_seed_score = sum(s.score for s in seeds)
if total_seed_score == 0:
total_seed_score = len(seeds)
frontier = {s.node_id: s.score / total_seed_score for s in seeds}
return PatternState(pattern=pattern, hop_index=0, scores={}, frontier=frontier)
def _execute_hop(state: PatternState, cache: EdgeCache, config: MPFPConfig) -> set[str]:
"""
Execute ONE hop of traversal, return frontier nodes for next hop.
This is a pure function that uses cached edges (no DB access).
Returns set of uncached nodes needed for next hop.
"""
if state.hop_index >= len(state.pattern):
return set()
edge_type = state.pattern[state.hop_index]
# Collect active nodes above threshold
active_nodes = [node_id for node_id, mass in state.frontier.items() if mass >= config.threshold]
if not active_nodes:
state.frontier = {}
return set()
# Propagate mass using cached edges
next_frontier: dict[str, float] = {}
uncached_for_next: set[str] = set()
for node_id, mass in state.frontier.items():
if mass < config.threshold:
continue
# Keep α portion for this node
state.scores[node_id] = state.scores.get(node_id, 0) + config.alpha * mass
# Push (1-α) to neighbors
push_mass = (1 - config.alpha) * mass
neighbors = cache.get_normalized_neighbors(edge_type, node_id, config.top_k_neighbors)
for neighbor in neighbors:
next_frontier[neighbor.node_id] = next_frontier.get(neighbor.node_id, 0) + push_mass * neighbor.weight
# Track if we'll need edges for this node in the next hop
if not cache.is_fully_loaded(neighbor.node_id):
uncached_for_next.add(neighbor.node_id)
state.frontier = next_frontier
state.hop_index += 1
return uncached_for_next
def _finalize_pattern(state: PatternState, config: MPFPConfig) -> PatternResult:
"""Finalize pattern by adding remaining frontier mass to scores."""
for node_id, mass in state.frontier.items():
if mass >= config.threshold:
state.scores[node_id] = state.scores.get(node_id, 0) + mass
return PatternResult(pattern=state.pattern, scores=state.scores)
async def mpfp_traverse_hop_synchronized(
pool,
pattern_jobs: list[tuple[list[SeedNode], list[str]]],
config: MPFPConfig,
cache: EdgeCache,
) -> list[PatternResult]:
"""
Execute ALL patterns with hop-synchronized edge loading.
Instead of running each pattern independently (causing multiple DB queries),
this function:
1. Runs hop 1 for ALL patterns (using pre-warmed seed edges)
2. Collects ALL unique hop-2 frontier nodes across patterns
3. Pre-warms hop-2 edges in ONE query
4. Runs hop 2 for ALL patterns
This reduces DB queries from O(patterns * hops) to O(hops).
Args:
pool: Database connection pool
pattern_jobs: List of (seeds, pattern) tuples
config: Algorithm parameters
cache: Shared edge cache (should be pre-warmed with seed edges)
Returns:
List of PatternResult for each pattern
"""
import time
# Initialize all pattern states
states = [_init_pattern_state(seeds, pattern) for seeds, pattern in pattern_jobs]
# Determine max hops (all patterns should be same length, but be safe)
max_hops = max((len(p) for _, p in pattern_jobs), default=0)
# Detailed timing for debugging
hop_times: list[dict] = []
# Execute hop-by-hop across ALL patterns
for hop in range(max_hops):
hop_start = time.time()
hop_timing = {"hop": hop, "patterns_executed": 0, "uncached_count": 0, "load_time": 0.0}
# Execute this hop for all patterns, collect uncached nodes for next hop
all_uncached: set[str] = set()
exec_start = time.time()
for state in states:
if state.hop_index < len(state.pattern):
uncached = _execute_hop(state, cache, config)
all_uncached.update(uncached)
hop_timing["patterns_executed"] += 1
hop_timing["exec_time"] = time.time() - exec_start
# Pre-warm edges for ALL uncached nodes before next hop
hop_timing["uncached_count"] = len(all_uncached)
if all_uncached:
uncached_list = list(all_uncached - cache._fully_loaded)
hop_timing["uncached_after_filter"] = len(uncached_list)
if uncached_list:
load_start = time.time()
edges_by_type = await load_all_edges_for_frontier(pool, uncached_list, config.top_k_neighbors)
hop_timing["load_time"] = time.time() - load_start
cache.edge_load_time += hop_timing["load_time"]
cache.db_queries += 1
cache.add_all_edges(edges_by_type, uncached_list)
hop_timing["edges_loaded"] = sum(
len(neighbors) for edges in edges_by_type.values() for neighbors in edges.values()
)
hop_timing["total_time"] = time.time() - hop_start
hop_times.append(hop_timing)
# Store hop timing details in cache for logging
cache.hop_details = hop_times
# Finalize all patterns
return [_finalize_pattern(state, config) for state in states]
async def mpfp_traverse_async(
pool,
seeds: list[SeedNode],
pattern: list[str],
config: MPFPConfig,
cache: EdgeCache,
) -> PatternResult:
"""
Async Forward Push traversal with lazy edge loading.
NOTE: For better performance with multiple patterns, use mpfp_traverse_hop_synchronized().
This function is kept for single-pattern use cases.
"""
if not seeds:
return PatternResult(pattern=pattern, scores={})
results = await mpfp_traverse_hop_synchronized(pool, [(seeds, pattern)], config, cache)
return results[0] if results else PatternResult(pattern=pattern, scores={})
def rrf_fusion(
results: list[PatternResult],
k: int = 60,
top_k: int = 50,
) -> list[tuple[str, float]]:
"""
Reciprocal Rank Fusion to combine pattern results.
Args:
results: List of pattern results
k: RRF constant (higher = more uniform weighting)
top_k: Number of results to return
Returns:
List of (node_id, fused_score) tuples, sorted by score descending
"""
fused: dict[str, float] = {}
for result in results:
if not result.scores:
continue
# Rank nodes by their score in this pattern
ranked = sorted(result.scores.keys(), key=lambda n: result.scores[n], reverse=True)
for rank, node_id in enumerate(ranked):
fused[node_id] = fused.get(node_id, 0) + 1.0 / (k + rank + 1)
# Sort by fused score and return top-k
sorted_results = sorted(fused.items(), key=lambda x: x[1], reverse=True)
return sorted_results[:top_k]
# -----------------------------------------------------------------------------
# Database Loading
# -----------------------------------------------------------------------------
async def fetch_memory_units_by_ids(
pool,
node_ids: list[str],
fact_type: str,
) -> list[RetrievalResult]:
"""Fetch full memory unit details for a list of node IDs."""
if not node_ids:
return []
async with acquire_with_retry(pool) as conn:
rows = await conn.fetch(
f"""
SELECT id, text, context, event_date, occurred_start, occurred_end,
mentioned_at, fact_type, document_id, chunk_id, tags
FROM {fq_table("memory_units")}
WHERE id = ANY($1::uuid[])
AND fact_type = $2
""",
node_ids,
fact_type,
)
return [RetrievalResult.from_db_row(dict(r)) for r in rows]
# -----------------------------------------------------------------------------
# Graph Retriever Implementation
# -----------------------------------------------------------------------------
class MPFPGraphRetriever(GraphRetriever):
"""
Graph retrieval using Meta-Path Forward Push with lazy edge loading.
Runs predefined patterns in parallel from semantic and temporal seeds,
loading edges on-demand per hop instead of loading entire graph upfront.
"""
def __init__(self, config: MPFPConfig | None = None):
"""
Initialize MPFP retriever.
Args:
config: Algorithm configuration (uses defaults if None)
"""
if config is None:
# Read top_k_neighbors from global config
from ...config import get_config
global_config = get_config()
config = MPFPConfig(top_k_neighbors=global_config.mpfp_top_k_neighbors)
self.config = config
@property
def name(self) -> str:
return "mpfp"
async def retrieve(
self,
pool,
query_embedding_str: str,
bank_id: str,
fact_type: str,
budget: int,
query_text: str | None = None,
semantic_seeds: list[RetrievalResult] | None = None,
temporal_seeds: list[RetrievalResult] | None = None,
adjacency=None, # Ignored - kept for interface compatibility
tags: list[str] | None = None,
tags_match: TagsMatch = "any",
) -> tuple[list[RetrievalResult], MPFPTimings | None]:
"""
Retrieve facts using MPFP algorithm with lazy edge loading.
Args:
pool: Database connection pool
query_embedding_str: Query embedding (used for fallback seed finding)
bank_id: Memory bank ID
fact_type: Fact type to filter
budget: Maximum results to return
query_text: Original query text (optional)
semantic_seeds: Pre-computed semantic entry points
temporal_seeds: Pre-computed temporal entry points
adjacency: Ignored (kept for interface compatibility)
tags: Optional list of tags for visibility filtering (OR matching)
Returns:
Tuple of (List of RetrievalResult with activation scores, MPFPTimings)
"""
import time
timings = MPFPTimings(fact_type=fact_type)
# Convert seeds to SeedNode format
semantic_seed_nodes = self._convert_seeds(semantic_seeds, "similarity")
temporal_seed_nodes = self._convert_seeds(temporal_seeds, "temporal_score")
# If no semantic seeds provided, fall back to finding our own
if not semantic_seed_nodes:
seeds_start = time.time()
semantic_seed_nodes = await self._find_semantic_seeds(
pool, query_embedding_str, bank_id, fact_type, tags=tags, tags_match=tags_match
)
timings.seeds_time = time.time() - seeds_start
logger.debug(
f"[MPFP] Found {len(semantic_seed_nodes)} semantic seeds for fact_type={fact_type} (tags={tags}, tags_match={tags_match})"
)
# Collect all pattern jobs
pattern_jobs = []
# Patterns from semantic seeds
for pattern in self.config.patterns_semantic:
if semantic_seed_nodes:
pattern_jobs.append((semantic_seed_nodes, pattern))
# Patterns from temporal seeds
for pattern in self.config.patterns_temporal:
if temporal_seed_nodes:
pattern_jobs.append((temporal_seed_nodes, pattern))
if not pattern_jobs:
logger.debug(
f"[MPFP] No pattern jobs (semantic_seeds={len(semantic_seed_nodes)}, temporal_seeds={len(temporal_seed_nodes)})"
)
return [], timings
timings.pattern_count = len(pattern_jobs)
# Shared edge cache across all patterns
cache = EdgeCache()
# Pre-warm cache with ALL seed node edges BEFORE running patterns
# This prevents redundant DB queries at hop 1
all_seed_ids = list({s.node_id for seeds, _ in pattern_jobs for s in seeds})
if all_seed_ids:
import time as time_module
prewarm_start = time_module.time()
edges_by_type = await load_all_edges_for_frontier(pool, all_seed_ids, self.config.top_k_neighbors)
cache.edge_load_time += time_module.time() - prewarm_start
cache.db_queries += 1
cache.add_all_edges(edges_by_type, all_seed_ids)
# Run all patterns with HOP-SYNCHRONIZED edge loading
# This batches hop-2 edge loads across ALL patterns into ONE query
# Reduces DB queries from O(patterns * hops) to O(hops)
step_start = time.time()
pattern_results = await mpfp_traverse_hop_synchronized(pool, pattern_jobs, self.config, cache)
timings.traverse = time.time() - step_start
# Record edge loading stats from cache
timings.edge_count = sum(len(neighbors) for g in cache.graphs.values() for neighbors in g.values())
timings.db_queries = cache.db_queries
timings.edge_load_time = cache.edge_load_time
timings.hop_details = cache.hop_details
# Fuse results
step_start = time.time()
fused = rrf_fusion(pattern_results, top_k=budget)
timings.fusion = time.time() - step_start
if not fused:
logger.debug(f"[MPFP] No fused results after RRF fusion (pattern_count={len(pattern_results)})")
return [], timings
# Get top result IDs
result_ids = [node_id for node_id, score in fused][:budget]
# Fetch full details
step_start = time.time()
results = await fetch_memory_units_by_ids(pool, result_ids, fact_type)
timings.fetch = time.time() - step_start
# Filter results by tags (graph traversal may have picked up unfiltered memories)
if tags:
from .tags import filter_results_by_tags
results = filter_results_by_tags(results, tags, match=tags_match)
timings.result_count = len(results)
# Add activation scores from fusion
score_map = {node_id: score for node_id, score in fused}
for result in results:
result.activation = score_map.get(result.id, 0.0)
# Sort by activation
results.sort(key=lambda r: r.activation or 0, reverse=True)
return results, timings
def _convert_seeds(
self,
seeds: list[RetrievalResult] | None,
score_attr: str,
) -> list[SeedNode]:
"""Convert RetrievalResult seeds to SeedNode format."""
if not seeds:
return []
result = []
for seed in seeds:
score = getattr(seed, score_attr, None)
if score is None:
score = seed.activation or seed.similarity or 1.0
result.append(SeedNode(node_id=seed.id, score=score))
return result
async def _find_semantic_seeds(
self,
pool,
query_embedding_str: str,
bank_id: str,
fact_type: str,
limit: int = 20,
threshold: float = 0.3,
tags: list[str] | None = None,
tags_match: TagsMatch = "any",
) -> list[SeedNode]:
"""Fallback: find semantic seeds via embedding search."""
from .tags import build_tags_where_clause_simple
tags_clause = build_tags_where_clause_simple(tags, 6, match=tags_match)
params = [query_embedding_str, bank_id, fact_type, threshold, limit]
if tags:
params.append(tags)
async with acquire_with_retry(pool) as conn:
rows = await conn.fetch(
f"""
SELECT id, 1 - (embedding <=> $1::vector) AS similarity
FROM {fq_table("memory_units")}
WHERE bank_id = $2
AND embedding IS NOT NULL
AND fact_type = $3
AND (1 - (embedding <=> $1::vector)) >= $4
{tags_clause}
ORDER BY embedding <=> $1::vector
LIMIT $5
""",
*params,
)
return [SeedNode(node_id=str(r["id"]), score=r["similarity"]) for r in rows]